Zhang
 
2002 | 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | Posters and Presentations


2007

  • T. Habib, Y. Deng and C. Zhang, "SVM based prediction method for subcellular localization of proteins using amino acid and amino acid pair composition," BMC Genomics 2007 (Accepted)

  • P. Li, C. Zhang, E.J. Perkins, P. Gong, Y. Deng, "Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks," BMC Bioinformatics 2007 8 (Suppl 8):S13.

  • C. Zhang, S. Dargan, H. Lan, and Y. Deng, "Web-based Information Retrieval with Local and Global Link Analysis," Proceedings of International Conference on Information and Knowledge Engineering (IKE'07), pp.117-123

  • A. Rajendran, P. Li, C. Zhang, and Y. Deng, "Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization," Proceedings of International Conference on Machine Learning; Models, Technologies and Applications (MLMTA'07), pp. 31-37.

    2006

  • Zhang C, Li P, Rajendran A and Deng Y, "Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microarray Data," BMC Bioinformatics, 2006, 7(Suppl 4):S15.

  • V. Nagarajan, N. Kaushik, B. Murali, C. Zhang, S. Lakhera, M. Elasri, Y. Deng, "A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity," BMC Bioinformatics 2006, 7(Suppl 2):S2

  • Deng Y, Ni J and Zhang C, "Development of computations in bioscience and bioinformatics and its applications: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB|06)," BMC Bioinformatics, 2006, 7(Suppl 4):S1.

  • Yang K, Deng Y, Zhang C, and Elasri M, "Identification of New Members of Hydrophobin Family Using Primary Structure Analysis," BMC Bioinformatics, 2006, 7(Suppl 4):S16.

  • Deng Y, Dong Y, Brown SJ, Zhang C, "An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information," in H.T. Shen et al. (Eds.): Lecture Notes in Computer Science 3842, pp 931-938, Springer-Verlag Berlin Heidelberg Publishers, 2006 (indexed in DBLP).

  • Chaoyang Zhang, Peng Li, Arun K. Rajendran, and Youping Deng, "Parallel Support Vector Machine for Classifying Microarray Data," Proceedings of IMSCCS'06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 110-115.

  • Jonathan Qiao, Yang Ye, and Chaoyang Zhang, "Parallelization of Similarity Search in Large Time Series Databases," Proceedings of the High Performance Technology and Applications (HPCTA) Symposium of IMSCCS"06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 355-362.

  • Matthew Bennett, Julie Stone, Chaoyang Zhang, "A Scalable Parallel HITS Algorithm for Page Ranking," Proceedings of the HPCTA06 Symposium of IMSCCS'06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 437-442.

    2005

  • Zhang, C., Lan, H. and Estrade, B. D., "Parallel SOR iterative algorithms and performance evaluation on a Linux cluster," Proceedings by the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA"05), CSREA Press, vol. I, 263-268, 2005

  • Godavarty, A., Eppstein, M.J., Zhang, C., and Sevick-Muraca, E.M., "Detection of single and multiple targets in tissue phantoms using fluorescence-enhanced optical imaging," Radiology , 235: 148-154, 2005.

  • Navodit Kaushik, Chaoyang Zhang, et. al., "Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'05), in press.

  • Yang, Y., Zhang, C., et. al., "Parallel computation of sensitivity analysis in optical tomography," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA"05), CSREA Press, vol. I, 1042-1048.

  • Deng, Y., Chokalingam, V. and Zhang, C., "Markov Chain Correlation Based Clustering of Gene Expression Data," Proceedings of the International Conference on Information Technology: Coding and Computing (IEEE ITCC 2005), Information Technology in Bioinformatics and Biomedical Computing, IEEE Computer Society, 2005.

  • C. Zhang, H. Lan, W. Dai and R. Nassar, "An Integrated LCVD Model for Axisymmetric Rod Growth with both Kinetically Limited and Mass-Transport Limited Rates," submitted to Microelectronic Engineering (under review).


    2004

  • Zhang, C., Chen, K., Lee, H., et. al., "Semi-automatic query expansion approach for web-based information retrieval," Communications of the International Information Management Association (IIMA) Journal, vol. 4, pp. 31-39, 2004.

  • Godavarty, A., Zhang, C., Eppstein, M.J., and Sevick-Muraca, E.M., "Fluorescence-enhanced optical imaging of large phantoms using single and dual source systems," Medical Physics , 31(2):183-190, 2004. (bestowed Sylvia Sorkin Greenfiled Award for the best paper published in Medical Physics in 2004, awarded by the American Association of Physicists in Medicine)

  • Godavarty, A., Thompson, A.B., Roy, R., Gurfinkel, M., Eppstein, M.J., Zhang, C., and Sevick-Muraca, E.M., "Diagnostic imaging of breast cancer using fluorescence-enhanced optical tomography: Phantom studies," J. Biomedical Optics: Special edition on Biomedical Optics and Women"s Health, 9:488-496, 2004.

  • Zhang, C., Ye, Y., Ali, A. and Lan, H., "An adaptive load balancing approach to parallel optical image reconstruction systems," proceedings of the 8th World Multiconference on Systemics, Cybernetics and Informatics (SCI 2004), Volume IX, pp. 212-217, 2004.

  • Zhang, C., Ye, Y., "Three-dimensional biomedical optical image reconstruction with referenced sensitivity analysis," proceedings of The 2004 International Conference on Modeling, Simulation and Visualization Methods (MSV04), CSREA Press, pp. 162-168, 2004.

  • Zhang, C., Ye, Y., Ali, A. and Lan, H., "Task partitioning and mapping strategies for parallel optical image reconstruction systems," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA"04), CSREA Press, vol. III, 1508-1514, 2004.

  • Godavarty, A., Eppstein, M.J., Zhang, C and Sevick-Muraca, E.M., "Fluorescence-enhanced optical tomography on large phantoms using dual point illumination geometry," accepted by OSA Biomedical Topical Meetings, Advances in Optical Imaging and Photon Migration (AOIPM), Optical Society of America, April, 2004.

  • Zhang, C., Zhang, Y., "A Modified Optical Image Reconstruction Model with Information Feedback," Proceedings of the International Conference on Information Technology: Coding and Computing (IEEE ITCC 2004), Information Technology in Bioinformatics and Biomedical Computing, IEEE Computer Society, vol. I, pp. 102-106, 2004.


    2003

  • Eppstein, M. J., Fedele, F., Laible, J., Zhang, C., Godvarty, A. and Sevick-Muraca, E. M., "A comparison of exact and approximate adjoint sensitivities in fluorescence tomography," IEEE Trans. of Medical Imaging, 22(10): 1215-1223, 2003.

  • Godavarty, A., Eppstein, M. J., Zhang, C., Theru, S., Thompson, A. B., Gurfinkel, M., Sevick-Muraca, E. M., "Fluorescence-enhanced optical imaging in large tissue volumes using a gain modulated ICCD camera," Phys. Med. Biol. 48, pp. 1701-1720, 2003.

  • Zhang, C., Eppstein, M. J., Godavarty, A. and Sevick-Muraca, E. M., "Hybrid approaches to Bayesian image reconstruction," Optical Tomograpgy and Spectroscopy of Tissue V, Proc SPIE, San Jose, CA 2003.

  • Eppstein, M. J. and Zhang, C., "Advances in biomedical image reconstruction," Optical Tomograpgy and Spectroscopy of Tissue V, Proc SPIE, San Jose, CA 2003.

  • Zhang, C., Dai, W., Nassar, R. and Lan, H., "Inverse model for optimizing the process of fabricating a microstrucutre," Micromaching and Microfabrication Process Technology VIII, Proc SPIE, pp. 540-548, San Jose, CA 2003.

  • Lan, H., Nassar, R., Dai, W. and Zhang, C., "Mathematical model for simulating axisymmetric rod growth with kinetically limited and mass transport limited rates," Micromaching and Microfabrication Process Technology VIII, Proc SPIE, pp. 549-560, San Jose, CA 2003.

  • Godavarty, A., Sevick-Muraca, E. M., Eppstein, M. J. and Zhang, C., "Fluorescence-enhanced tomographic imaging in large phantoms using gain-modulated ICCD camera," Optical Tomograpgy and Spectroscopy of Tissue V, Proc SPIE, San Jose, CA 2003.


    2002

  • Choi, B. and Zhang, C., "Component-based distributed computing for numerical simulation," International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'02), Las Vegas, 2002.

  • Nassar, R., Zhang, C., Dai, W., Lan, H. and J. Maxwell, "Mathematical modeling of three-dimensional laser chemical vapor deposition," Microelectronic Engineering, vol. 60, pp. 395-408, 2002.



    Other Conference/ Symposia Posters and Presentations

  • Zhang, C., Chen, K., Lee, H., et. al "Semi-automatic query expansion approach for web-based information retrieval," presentation in the Annual Conference of the International Information Management Association (IIMA), October 2004.

  • Chen, K., Lee, H., Zhang, C., "Security control in virtual private networks," the 35th Annual Meeting of the Decision Sciences Institute, Boston, Nov. 2004. (Research abstract)

  • Godavarty, A., Sevick-Muraca, E. M., Eppstein, M. J., Zhang, C., "Fluorescence-enhanced molecular imaging towards breast cancer diagnostics," RSNA (Radiological Society of North America) 89th Annual Meeting, Chicago, IL, Nov 30-Dec 5, 2003.

  • Godavarty, A., Sevick-Muraca, E. M., Zhang, C., Eppstein, M. J., "Molecular imaging using fluorescent markers: Towards breast cancer diagnosis," AiChE (American Institute of Chemical Engineers) Annual Meeting, San Francisco, CA, 16-21 Nov, 2003.

  • Godavarty, A., Sevick-Muraca, E. M., Zhang, C., Eppstein, M. J., "Fluorescence-enhanced optical imaging on large phantoms: Depth studies," Frontiers in Optics Laser Science XIX 87th OSA (Optical Society of America) Annual Meeting, Tucson, AZ, 5-9 Oct 2003.

  • Godavarty, A., Sevick-Muraca, E. M., Zhang, C., Eppstein, M. J., "Optical-based molecular imaging with 3D tomographic studies on large breast phantoms," Biomedical Engineering Society Annual Fall Meeting, Nashville, TN, 1-4 Oct 2003.

  • Eppstein, M.J., Godavarty, A., Zhang, C., Laible, J., and Sevick-Muraca, E.M.,"3-D Fluorescence Tomography for Breast Imaging", 17th Vermont Cancer Center Cancer Research Symposium: Cancer in a Post-Genomic Era, Burlington, VT, Oct, 2002.

  • Eppstein, M.J., Godavarty, A., Zhang, C., Laible, J., and Sevick-Muraca, E.M., "Three-dimensional Bayesian tomography using sparse fluorescence frequency domain photon migration measurements on clinically relevant phantom volumes", Third Inter-Institute Workshop on Diagnostic Optical Imaging and Spectroscopy: The Clinical Adventure, National Institutes of Health, Bethesda, MD, Sept., 2002.
    • 2008